Specification

This pages provides links to the BioPAX specifications and documentation. The latest version is BioPAX Level 3, and it is recommended that users adopt or migrate to this version. (See other wiki pages in the Category:LEVEL3.)

BioPAX Level3

 * Supports metabolic pathways, signaling pathways (including states of molecules and generic molecules), gene regulatory networks, molecular interactions, genetic interactions. Not backwards compatible with Level 2.
 * Official BioPAX Level 3 Documentation - Status: Final, Release v1.0 July 2010
 * Official BioPAX Level 3 OWL file - Status: Final, Release v1.0 July 2010
 * OWLDoc - ontology HTML view
 * WebProtégé view
 * The latest BioPAX and examples (on Github)

BioPAX Level2

 * Supports metabolic pathways, signaling pathways, molecular interactions. Backwards compatible with Level 1.
 * Official BioPAX Level 2 OWL file - Status: Final. Recommend using Level 3.
 * Official BioPAX Level 2 Documentation (PDF) - Status: Final. Recommend using Level 3.
 * BioPAX Level 2 Data Sources
 * Developer resources
 * BioPAX L2 sources (CVS) - all versions from the previously used CVS version management system.
 * BioPAX L2 Examples
 * Documentation
 * Auto-generated ontology documentation

BioPAX Level1

 * Supports metabolic pathways.
 * Official BioPAX Level 1 OWL file - Status: Final. Recommend using Level 3.
 * Official BioPAX Level 1 Documentation - Status: Final. Recommend using Level 3.
 * BioPAX Level 1 Data Sources
 * Developer resources
 * BioPAX CVS home - all versions from the previously used CVS version management system.
 * BioPAX Examples
 * Documentation
 * Auto-generated ontology documentation