SBPAX3 Doc

Some automatically generated documentation of the proposed SBPAX3 ontology:

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================================================================      ***   hasNumber   *** - URI: http://vcell.org/sbpax3#hasNumber Has domain: SBEntity Has range: float

Comment: The number representing this measurable systems biology entity. Example: a concentration of 5 mol/l would have the number 5 together with the unit string "mol/l"

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================================================================      ***   hasUnit   *** - URI: http://vcell.org/sbpax3#hasUnit Has domain: SBMeasurable Has range: UnitOfMeasurement

Comment: An instance of uome-core:UnitOfMeasurement representing the unit connected to this measurable systems biology entity. Examples: uome-list:Metre, uome-list:Kilogram, uome-list:MicrogramPerMillilitre

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================================================================      ***   SBEntity   *** - URI: http://vcell.org/sbpax3#SBEntity Is super class of: SBState, SBMeasurable Is domain of: hasNumber, sbSubEntity, sbTerm Is range of: sbSubEntity

Comment: An entity that can be characterized by one or more systems biology terms. Examples: a BioPAX entity; a rate law or a parameter in a particular instance.

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================================================================      ***   SBMeasurable   *** - URI: http://vcell.org/sbpax3#SBMeasurable Is sub class of: SBEntity Is domain of: hasUnit

Comment: An entity that can be characterized by one or more systems biology terms and that can be represented by a number and a unit. Example: a parameter in a particular instance.

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================================================================      ***   SBState   *** - URI: http://vcell.org/sbpax3#SBState Is sub class of: SBEntity

Comment: An entity that describes the state of a system. This state can be described by sub elements, whcih makes it usefull to group data that correspond to the same state.

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================================================================      ***   sbSubEntity   *** - URI: http://vcell.org/sbpax3#sbSubEntity Has domain: SBEntity Has range: SBEntity

Comment: A systems biology entity that is a part, attribute or subset of this systems biology entity. Examples: rate law of an interaction; parameters of a rate law.

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================================================================      ***   sbTerm   *** - URI: http://vcell.org/sbpax3#sbTerm Has domain: SBEntity Has range: SBVocabulary

Comment: The systems biology term that this entity is an instance of. Examples: an SBO term; an SBML element name.

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================================================================      ***   SBVocabulary   *** - URI: http://vcell.org/sbpax3#SBVocabulary Is sub class of: ControlledVocabulary Is range of: sbTerm

Comment: Controlled vocabulary that describes a systems biology concept, such as a Systems Biology Ontology term. Examples: an SBO term; an SBML element name

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================================================================      ***   UnitOfMeasurement   *** - URI: http://vcell.org/uome/expressions/#UnitOfMeasurement Is range of: hasUnit

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