SBPAX3 SGMP Example 3 in N3

This is an example of adding kinetic data to BioPAX using SBPAX3 for selective ion channel kinetics (Polycystin 2) based on data from Signaling Gateway Molecule Pages. Their BioPAX Level 3 export was taken, some sample fragments extracted, some URIs adjusted, some SBO terms guessed, and their data added using SBPAX3. Original data is here.

@prefix :       . @prefix rdfs:   . @prefix ex:     . @prefix bp:     . @prefix owl:    . @prefix xsd:    . @prefix sgmp:   . @prefix sbx3:   . @prefix rdf:    . @prefix uome-list: .

ex:conductance3Magnesium a      sbx3:SBMeasurable ; sbx3:hasNumber "81.0"^^xsd:double ; sbx3:hasUnit uome-list:Picosiemens ; sbx3:sbTerm ex:conductanceTerm.

sgmp:ChannelIon_15143_179 sbx3:sbSubEntity ex:conductance3Sodium.

sgmp:ChannelIon_12028_126 sbx3:sbSubEntity ex:conductance3Magnesium.

ex:conductance3Lithium a      sbx3:SBMeasurable ; sbx3:hasNumber "15.0"^^xsd:double ; sbx3:hasUnit uome-list:Picosiemens ; sbx3:sbTerm ex:conductanceTerm.

ex:conductance3Potassium a      sbx3:SBMeasurable ; sbx3:hasNumber "17.0"^^xsd:double ; sbx3:hasUnit uome-list:Picosiemens ; sbx3:sbTerm ex:conductanceTerm.

sgmp:ChannelIon_12028_33 sbx3:sbSubEntity ex:conductance3Calcium.

ex:conductanceTerm a      sbx3:SBVocabulary ; bp:term "conductance" ; bp:xref ex:conductanceSBORef.

sgmp:ChannelIon_15143_1145 sbx3:sbSubEntity ex:conductance3Strontium.

ex:conductance3Rubidium a      sbx3:SBMeasurable ; sbx3:hasNumber "17.0"^^xsd:double ; sbx3:hasUnit uome-list:Picosiemens ; sbx3:sbTerm ex:conductanceTerm.

ex:conductance3Strontium a      sbx3:SBMeasurable ; sbx3:hasNumber "94.0"^^xsd:double ; sbx3:hasUnit uome-list:Picosiemens ; sbx3:sbTerm ex:conductanceTerm.

sgmp:ChannelIon_15143_838 sbx3:sbSubEntity ex:conductance3Rubidium.

sgmp:ChannelIon_15143_837 sbx3:sbSubEntity ex:conductance3Lithium.

ex:conductance3Sodium a      sbx3:SBMeasurable ; sbx3:hasNumber "18.0"^^xsd:double ; sbx3:hasUnit uome-list:Picosiemens ; sbx3:sbTerm ex:conductanceTerm.

ex:conductance3Barium a      sbx3:SBMeasurable ; sbx3:hasNumber "104.0"^^xsd:double ; sbx3:hasUnit uome-list:Picosiemens ; sbx3:sbTerm ex:conductanceTerm.

sgmp:ChannelIon_15143_155 sbx3:sbSubEntity ex:conductance3Potassium.

ex:conductance3Calcium a      sbx3:SBMeasurable ; sbx3:hasNumber "88.0"^^xsd:double ; sbx3:hasUnit uome-list:Picosiemens ; sbx3:sbTerm ex:conductanceTerm.

sgmp:ChannelIon_12028_822 sbx3:sbSubEntity ex:conductance3Barium.

ex:conductanceSBORef a      bp:UnificationXref ; bp:comment "conductance" ; bp:db  "SBO" ; bp:id  "0000257".